- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.26 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x NI: NICKEL (II) ION(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.15: 4 residues within 4Å:- Chain A: R.60, E.61, T.62, N.65
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:E.61, A:T.62, A:T.62
- Water bridges: A:R.60, A:R.60, A:R.60, A:R.60, A:R.60, A:N.65
- Salt bridges: A:R.60
SO4.16: 3 residues within 4Å:- Chain A: R.102, H.103, N.106
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:N.106
- Water bridges: A:R.102, A:R.102, A:R.102, A:R.102, A:H.103, A:H.103
- Salt bridges: A:R.102, A:H.103
SO4.17: 2 residues within 4Å:- Chain A: M.19, I.20
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.20
- Water bridges: A:I.18
- 1 x BXH: ethyl 2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanoate(Non-covalent)
BXH.18: 13 residues within 4Å:- Chain A: L.75, Q.77, H.90, Y.136, A.138, D.139, Y.181, T.188, F.189, A.190, H.192, K.210, K.245
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:L.75, A:Y.136, A:A.138, A:Y.181
- Hydrogen bonds: A:K.245
- Water bridges: A:A.190, A:N.202, A:N.202, A:K.210, A:K.210
- Salt bridges: A:H.90, A:K.245
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malecki, P.H. et al., Structure-Based Screening of Tetrazolylhydrazide Inhibitors versus KDM4 Histone Demethylases. Chemmedchem (2019)
- Release Date
- 2019-02-20
- Peptides
- Lysine-specific demethylase 4D: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.26 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x NI: NICKEL (II) ION(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 1 x BXH: ethyl 2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanoate(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malecki, P.H. et al., Structure-Based Screening of Tetrazolylhydrazide Inhibitors versus KDM4 Histone Demethylases. Chemmedchem (2019)
- Release Date
- 2019-02-20
- Peptides
- Lysine-specific demethylase 4D: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A