SMTL ID : 6euq.1

MdfA(Q131R/L339E)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)

BNG.1: 6 residues within 4Å: Chain A: V.160, A.163, W.164, H.166, V.167, L.176 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.160, A:W.164 Hydrogen bonds: A:A.163, A:H.166

1 x DXC: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID(Non-covalent)

DXC.2: 14 residues within 4Å: Chain A: Y.30, N.33, D.34, M.58, L.62, Q.69, G.123, A.150, P.154, L.236, S.350, Q.357, M.358 Ligands: PGE.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.30, A:N.33, A:L.236 Hydrogen bonds: A:D.34, A:G.123

2 x PR: PRASEODYMIUM ION(Non-covalent)

PR.3: 4 residues within 4Å: Chain A: E.207, D.211 Ligands: PGE.7, ACT.12 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.207, A:D.211, H2O.2 PR.4: 2 residues within 4Å: Chain A: E.207 Ligands: PGE.7 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.207, A:E.207, H2O.2

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 2 residues within 4Å: Chain A: D.52, N.374 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.374 Water bridges: A:I.51 PGE.6: 6 residues within 4Å: Chain A: A.150, L.151, S.232, L.268, Q.357 Ligands: DXC.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.232 PGE.7: 3 residues within 4Å: Chain A: E.207 Ligands: PR.3, PR.4 No protein-ligand interaction detected (PLIP)

3 x OCT: N-OCTANE(Non-covalent)

OCT.8: 4 residues within 4Å: Chain A: L.75, I.79, P.83, A.87 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.75, A:I.79, A:P.83, A:A.87 OCT.9: 3 residues within 4Å: Chain A: I.308, S.309, W.315 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.308, A:W.315, A:W.315 OCT.10: 1 residues within 4Å: Chain A: W.315 No protein-ligand interaction detected (PLIP)

1 x HEX: HEXANE(Non-covalent)

HEX.11: 3 residues within 4Å: Chain A: W.70, L.205, G.209 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.70, A:W.70

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.12: 5 residues within 4Å: Chain A: R.78, E.207, L.208, D.211 Ligands: PR.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.207, A:L.208 Salt bridges: A:R.78

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.13: 2 residues within 4Å: Chain A: R.198, D.343 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.198, A:R.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zomot, E. et al., A New Critical Conformational Determinant of Multidrug Efflux by an MFS Transporter. J. Mol. Biol. (2018)

Release Date

2018-08-08

Peptides

Multidrug transporter MdfA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Multidrug transporter MdfA