SMTL ID : 6ew7.1

Crystal structure of the BCL6 BTB domain in complex with anilinopyrimidine ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: M.108, H.110, V.111 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain B: M.108, H.110, V.111 Ligand excluded by PLIP

2 x C1W: 2-chloranyl-4-[[5-chloranyl-4-[(4-fluorophenyl)amino]pyrimidin-2-yl]amino]benzoic acid(Non-covalent)

C1W.2: 10 residues within 4Å: Chain A: M.45, A.46, C.47, S.48, G.49, Y.52, Q.107 Chain B: N.15, R.18, L.19 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Y.52 Hydrogen bonds: A:M.45, B:R.18 Water bridges: A:Y.52, A:Y.52, B:N.15, B:N.15, B:R.18 C1W.4: 10 residues within 4Å: Chain A: N.15, R.18, L.19 Chain B: M.45, A.46, C.47, S.48, G.49, Y.52, Q.107 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.18, B:M.45 Water bridges: A:N.15, A:N.15, A:R.18, B:Y.52 Hydrophobic interactions: B:Y.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCoull, W. et al., Development of a Novel B-Cell Lymphoma 6 (BCL6) PROTAC To Provide Insight into Small Molecule Targeting of BCL6. ACS Chem. Biol. (2018)

Release Date

2018-10-24

Peptides

B-cell lymphoma 6 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

B-cell lymphoma 6 protein

Related Entries With Identical Sequence