SMTL ID : 6ew8.1

Crystal structure of the BCL6 BTB domain in complex with anilinopyrimidine ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: M.109, H.111, V.112 Ligands: C0Q.2 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain B: M.109, H.111, V.112 Ligands: C0Q.4 Ligand excluded by PLIP

2 x C0Q: anilinopyrimidine ligand(Non-covalent)

C0Q.2: 13 residues within 4Å: Chain A: M.46, A.47, C.48, S.49, G.50, Y.53, Q.108, M.109, E.110 Chain B: N.16, R.19, L.20 Ligands: CL.1 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.53, A:E.110 Hydrogen bonds: A:M.46, A:E.110, B:R.19 Water bridges: B:R.23 C0Q.4: 13 residues within 4Å: Chain A: N.16, R.19, L.20 Chain B: M.46, A.47, C.48, S.49, G.50, Y.53, Q.108, M.109, E.110 Ligands: CL.3 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:R.19, B:M.46, B:E.110 Water bridges: A:R.23 Hydrophobic interactions: B:Y.53, B:E.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCoull, W. et al., Development of a Novel B-Cell Lymphoma 6 (BCL6) PROTAC To Provide Insight into Small Molecule Targeting of BCL6. ACS Chem. Biol. (2018)

Release Date

2018-10-24

Peptides

B-cell lymphoma 6 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

B-cell lymphoma 6 protein