SMTL ID : 6ewb.1 (1 other biounit)

Crystal structure of GII.4 UNSW 2012 P domain in complex with Fab 10E9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain B: L.266, F.267, H.285, L.287, V.288, M.310 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.285, B:V.288 EDO.2: 6 residues within 4Å: Chain F: Q.37, Q.38, K.39, T.42, S.43, K.45 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:Q.37, F:K.39, F:T.42, F:T.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koromyslova, A.D. et al., Human Norovirus Neutralized by a Monoclonal Antibody Targeting the Histo-Blood Group Antigen Pocket. J.Virol. (2019)

Release Date

2018-11-14

Peptides

VP1: AB
Fab heavy chain: CE
Fab light chain: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

E
H

D
F

F
L

VP1

Fab heavy chain

Fab light chain

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