SMTL ID : 6ey1.1

prolyl hydroxylase from Trichoplax adhaerens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: N.46, L.49, F.68, C.128 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.124, A:Y.124 ACT.2: 6 residues within 4Å: Chain A: R.105, Y.156, Y.163, H.166, D.168 Ligands: MN.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.163 Hydrogen bonds: A:Y.156 Salt bridges: A:R.105, A:H.166 ACT.3: 5 residues within 4Å: Chain A: L.180, Y.182, L.196, V.229, R.236 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.180, A:L.196, A:V.229 Salt bridges: A:R.236

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: S.189, G.193, G.194, Q.195, K.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.195 Water bridges: A:G.194, A:Q.195

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.5: 4 residues within 4Å: Chain A: H.166, D.168, H.227 Ligands: ACT.2 6 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:H.166, A:D.168, A:H.227, H2O.1, H2O.2, ACT.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lippl, K. et al., Born to sense: biophysical analyses of the oxygen sensing prolyl hydroxylase from the simplest animal Trichoplax adhaerens. Hypoxia (Auckl) (2018)

Release Date

2018-10-03

Peptides

HIF prolyl hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HIF prolyl hydroxylase

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