SMTL ID : 6eyf.1

Butyrylcolinesterase expressed in CHO cells co-crystallised with a rivastigmine analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 1 residues within 4Å: Chain A: N.55 No protein-ligand interaction detected (PLIP) NAG.2: 3 residues within 4Å: Chain A: N.104, N.186, K.188 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.186 NAG.3: 3 residues within 4Å: Chain A: S.336, N.339, I.342 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.334, A:N.339 NAG.4: 4 residues within 4Å: Chain A: R.463, S.464, E.480, N.483 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.480, A:N.483 Hydrogen bonds: A:N.483

1 x BY2: [3-[(1~{R})-1-(dimethylamino)ethyl]-4-oxidanyl-phenyl] ~{N}-ethyl-~{N}-methyl-carbamate(Non-covalent)

BY2.5: 11 residues within 4Å: Chain A: N.66, I.67, D.68, W.80, Q.117, T.118, P.283, F.327, Y.330, W.428 Ligands: GOL.6 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Q.117, A:T.118, A:P.283, A:F.327, A:Y.330 Water bridges: A:H.436

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: W.80, G.113, G.114, Y.126, E.195, S.196, H.436, G.437 Ligands: BY2.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.195 Water bridges: A:G.113, A:H.436 GOL.7: 6 residues within 4Å: Chain A: L.16, L.27, Y.59, W.96, D.127, K.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.96, A:D.127, A:K.129 GOL.8: 2 residues within 4Å: Chain A: D.338, P.427 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.427 GOL.9: 3 residues within 4Å: Chain A: K.321, Y.418, R.513 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.321, A:K.321, A:Y.418, A:Y.418, A:R.513, A:R.513

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 4 residues within 4Å: Chain A: Q.314, G.411, N.412, N.413 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.314, A:N.413

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dighe, S. et al., Rivastigmine and metabolite analogues with putative Alzheimer's disease-modifying properties in a Caenorhabditis elegans model. Commun Chem (2019)

Release Date

2018-11-21

Peptides

Cholinesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cholinesterase

Related Entries With Identical Sequence