SMTL ID : 6eyz.1

PI3 kinase delta in complex with 4-Fluorophenyl 5-(4-(5-((4-isopropylpiperazin-1-yl)methyl)oxazol-2-yl)-1H-indazol-6-yl)-2-methoxynicotinate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x C5W: 2-methoxy-5-[4-[5-[(4-propan-2-ylpiperazin-1-yl)methyl]-1,3-oxazol-2-yl]-2~{H}-indazol-6-yl]pyridine-3-carboxylic acid(Covalent)

C5W.1: 19 residues within 4Å: Chain A: T.757, M.759, P.765, W.767, I.784, K.786, L.791, D.794, Y.820, I.832, E.833, V.834, V.835, S.838, D.839, T.840, M.907, I.917, D.918 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.757, A:W.767, A:I.784, A:I.832, A:I.832, A:I.917 Hydrogen bonds: A:K.786, A:E.833, A:V.835, A:D.918 Water bridges: A:F.919 Salt bridges: A:D.839

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalton, S.E. et al., Selectively Targeting the Kinome-Conserved Lysine of PI3K delta as a General Approach to Covalent Kinase Inhibition. J. Am. Chem. Soc. (2018)

Release Date

2017-12-20

Peptides

Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform

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