SMTL ID : 6ezv.1

The cytotoxin MakA from Vibrio cholerae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: Q.39, D.368, E.371, Q.375 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.39, A:Q.39, A:Q.375 GOL.2: 4 residues within 4Å: Chain A: T.137, Q.140, Q.141, Q.144 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.140, A:Q.141, A:Q.144

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: N.203, I.206, D.207, R.210, Q.302 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.302 Hydrogen bonds: A:N.203 Water bridges: A:R.210 Salt bridges: A:R.210 ACT.4: 9 residues within 4Å: Chain A: Q.43, A.226, V.227, G.228, V.229, I.231, L.372, Q.375, L.376 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.372, A:Q.375, A:L.376 Hydrogen bonds: A:V.227, A:G.228

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.5: 7 residues within 4Å: Chain A: T.38, F.110, F.114, T.328, W.329, F.332, W.366 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.38 Water bridges: A:F.332

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dongre, M. et al., Flagella-mediated secretion of a novelVibrio choleraecytotoxin affecting both vertebrate and invertebrate hosts. Commun Biol (2018)

Release Date

2018-05-02

Peptides

Non-hemolytic enterotoxin lytic component L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Non-hemolytic enterotoxin lytic component L1