SMTL ID : 6ezz.1

Crystal structure of Escherichia coli amine oxidase mutant E573Q

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: Y.466, H.524, H.526, H.689 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:Y.466, A:H.524, A:H.526, A:H.689 CU.10: 4 residues within 4Å: Chain B: Y.466, H.524, H.526, H.689 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:Y.466, B:H.524, B:H.526, B:H.689

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: K.133, D.533, L.534, D.535, D.678, A.679 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.533, A:L.534, A:D.535, A:D.678, A:A.679, H2O.3 CA.11: 6 residues within 4Å: Chain B: K.133, D.533, L.534, D.535, D.678, A.679 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.533, B:L.534, B:D.535, B:D.678, B:A.679, H2O.30

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: K.160, H.161, A.183, H.184, D.239 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.161, A:D.239 Water bridges: A:D.182, A:A.183 GOL.4: 8 residues within 4Å: Chain A: R.452, H.475, N.477, T.479, K.709 Chain B: T.612, R.692, E.702 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.612, B:T.612, B:R.692, A:R.452, A:N.477 Water bridges: B:R.692, B:E.702, B:W.703, A:N.477 GOL.5: 9 residues within 4Å: Chain A: Y.433, E.451, R.453 Chain B: M.306, Q.307, I.308, G.399, P.403, S.404 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:I.308, B:S.404, A:R.453 Water bridges: B:M.306, B:M.306 GOL.6: 9 residues within 4Å: Chain A: M.306, Q.307, I.308, G.399, P.403, S.404 Chain B: Y.433, E.451, R.453 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:I.308, A:G.399, A:S.404, B:R.453 Water bridges: A:M.306 GOL.7: 8 residues within 4Å: Chain A: T.509, R.510, Y.511, G.512, T.513 Chain B: M.546, V.565 Ligands: GOL.13 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.510 Water bridges: B:V.565 GOL.8: 7 residues within 4Å: Chain A: Q.567, L.587, N.599, P.600, S.602, W.711, N.712 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.567, A:S.602, A:W.711, A:N.712 Water bridges: A:S.602 GOL.9: 7 residues within 4Å: Chain A: R.432, R.458, D.471, I.473, D.483, W.703, H.705 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.432, A:R.432, A:R.458, A:D.471 Water bridges: B:A.434 GOL.12: 6 residues within 4Å: Chain B: R.432, D.471, I.473, D.483, W.703, H.705 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.432, B:R.432, B:R.458, B:D.471, B:D.471, B:D.483 Water bridges: B:H.705 GOL.13: 9 residues within 4Å: Chain B: M.546, Q.567, L.587, N.599, P.600, S.602, W.711, N.712 Ligands: GOL.7 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.567, B:Q.567, B:S.602, B:S.602, B:N.712 Water bridges: B:N.599, B:N.599

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaule, T.G. et al., Oxygen Activation Switch in the Copper Amine Oxidase of Escherichia coli. Biochemistry (2018)

Release Date

2018-08-29

Peptides

Primary amine oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Primary amine oxidase