SMTL ID : 6f00.2 (2 other biounits)

Crystal Structure of human tRNA dihydrouridine synthase (20) dsRBD E423A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.52, E.53, T.54, K.83 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.54, A:T.54, A:T.54 Salt bridges: A:K.83 SO4.2: 2 residues within 4Å: Chain A: A.48, Q.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.49, A:Q.49 SO4.3: 4 residues within 4Å: Chain A: R.25, P.29, A.30, Q.31 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.25, A:Q.31

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: K.18, S.64, Q.75, S.76, T.77, L.78, W.79 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.18, A:S.64, A:Q.75, A:S.76, A:L.78 Water bridges: A:S.65 GOL.5: 4 residues within 4Å: Chain A: P.101, E.102, G.103, R.104 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.102, A:G.103, A:R.104, A:R.104, A:R.104 GOL.6: 5 residues within 4Å: Chain A: T.33, K.35, M.36, L.39, Q.88 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.33, A:K.35, A:Q.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Charles, B.N. et al., Crystal Structure of human tRNA-dihydrouridine(20) synthase dsRBD E423A mutant. To Be Published

Release Date

2018-12-12

Peptides

tRNA-dihydrouridine(20) synthase [NAD(P)+]-like: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

tRNA-dihydrouridine(20) synthase [NAD(P)+]-like

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