- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-pentamer
- Ligands
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.4: 4 residues within 4Å:- Chain A: P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.68, A:I.73
NA.10: 4 residues within 4Å:- Chain B: P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.71, B:I.73
NA.14: 2 residues within 4Å:- Chain C: T.226
- Chain D: T.226
4 PLIP interactions:1 interactions with chain C, 2 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: C:T.226, D:T.226, D:T.226, B:T.226
NA.17: 3 residues within 4Å:- Chain C: P.68, I.71, I.73
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:P.68, C:I.73
NA.23: 4 residues within 4Å:- Chain D: P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:P.68, D:I.73
NA.29: 3 residues within 4Å:- Chain E: P.68, I.71, I.73
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:P.68, E:I.73
- 10 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 8 residues within 4Å:- Chain A: L.45, I.73, P.74, E.75, I.76, R.85, Y.102, E.104
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.76
- Salt bridges: A:R.85
ACT.7: 6 residues within 4Å:- Chain A: I.25, F.42, R.105
- Chain B: R.77, I.131, E.181
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:I.25, A:F.42, B:I.131
- Salt bridges: A:R.105, B:R.77
- Hydrogen bonds: B:E.181
ACT.11: 6 residues within 4Å:- Chain B: I.73, P.74, I.76, R.85, Y.102, E.104
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:I.73
- Hydrogen bonds: B:P.74, B:I.76
- Salt bridges: B:R.85
ACT.13: 5 residues within 4Å:- Chain B: F.42, R.105
- Chain C: R.77, I.131, E.181
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:F.42, C:I.131
- Salt bridges: B:R.105, C:R.77
ACT.18: 6 residues within 4Å:- Chain C: L.45, I.73, P.74, I.76, R.85, Y.102
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:I.76, C:I.76
- Salt bridges: C:R.85
ACT.20: 5 residues within 4Å:- Chain C: F.42, R.105
- Chain D: R.77, I.131, E.181
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:F.42, D:I.131
- Salt bridges: C:R.105, D:R.77
ACT.24: 5 residues within 4Å:- Chain D: I.73, P.74, I.76, R.85, Y.102
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:I.76, D:I.76
- Salt bridges: D:R.85
ACT.26: 5 residues within 4Å:- Chain D: F.42, R.105
- Chain E: R.77, I.131, E.181
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain D- Hydrophobic interactions: E:I.131, D:F.42
- Salt bridges: E:R.77, D:R.105
ACT.27: 5 residues within 4Å:- Chain A: R.77, I.131, E.181
- Chain E: F.42, R.105
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain E- Hydrophobic interactions: A:I.131
- Salt bridges: A:R.77, E:R.105
ACT.30: 7 residues within 4Å:- Chain E: L.45, I.73, P.74, I.76, R.85, Y.102, E.104
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:I.73
- Hydrogen bonds: E:I.76
- Salt bridges: E:R.85
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)(Non-functional Binders)
LMT.6: 6 residues within 4Å:- Chain A: A.237, I.240, L.241, T.244
- Chain E: A.237
- Ligands: LMT.21
5 PLIP interactions:1 interactions with chain E, 4 interactions with chain A- Hydrophobic interactions: E:A.237, A:A.237, A:I.240, A:I.240, A:L.241
LMT.12: 6 residues within 4Å:- Chain A: A.237
- Chain B: I.233, I.236, A.237, I.240
- Ligands: LMT.21
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:I.233, B:I.236, B:A.237, B:I.240, B:I.240, A:A.237
LMT.19: 6 residues within 4Å:- Chain B: A.237
- Chain C: I.240, L.241, T.244
- Chain D: T.244
- Ligands: LMT.21
4 PLIP interactions:2 interactions with chain C, 1 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: C:I.240, C:L.241, B:A.237, D:T.244
LMT.21: 5 residues within 4Å:- Ligands: LMT.6, LMT.12, LMT.19, LMT.25, LMT.31
No protein-ligand interaction detected (PLIP)LMT.25: 6 residues within 4Å:- Chain D: I.233, A.237, I.240, L.241, T.244
- Ligands: LMT.21
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:I.233, D:I.240, D:I.240, D:L.241
LMT.31: 6 residues within 4Å:- Chain D: A.237
- Chain E: A.237, I.240, L.241, T.244
- Ligands: LMT.21
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:A.237, E:I.240, E:L.241, D:A.237
- 2 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
PLC.8: 8 residues within 4Å:- Chain B: F.210, W.213, T.214, W.217
- Chain C: I.271, T.274, V.275, Y.278
12 PLIP interactions:6 interactions with chain B, 6 interactions with chain C- Hydrophobic interactions: B:F.210, B:W.213, B:T.214, B:W.217, B:W.217, B:W.217, C:I.271, C:I.271, C:T.274, C:V.275, C:Y.278, C:Y.278
PLC.15: 9 residues within 4Å:- Chain C: R.118, F.121, Y.194, I.198, I.202, L.206, Y.254, N.307, F.315
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:F.121, C:F.121, C:F.121, C:Y.194, C:I.198, C:I.202, C:L.206, C:Y.254
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nemecz, A. et al., Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel. PLoS Biol. (2017)
- Release Date
- 2018-01-10
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-pentamer
- Ligands
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)(Non-functional Binders)
- 2 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nemecz, A. et al., Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel. PLoS Biol. (2017)
- Release Date
- 2018-01-10
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.