SMTL ID : 6f0x.1

Cryo-EM structure of TRIP13 in complex with ATP gamma S, p31comet, C-Mad2 and Cdc20

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-1-1-1-mer

Ligands

5 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Covalent)

AGS.1: 19 residues within 4Å: Chain A: S.138, L.139, V.140, Y.141, G.182, T.183, G.184, K.185, T.186, S.187, D.252, N.300, I.330, G.385, R.386, R.389 Chain B: T.170, D.285, R.312 20 PLIP interactions: 16 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:V.140, A:V.140, A:G.182, A:T.183, A:G.184, A:K.185, A:K.185, A:K.185, A:T.186, A:T.186, A:S.187, A:S.187, A:N.300, B:K.288, B:K.288 Salt bridges: A:K.185, A:R.386, A:R.386, B:R.312, B:R.312 AGS.2: 16 residues within 4Å: Chain B: S.138, L.139, V.140, Y.141, G.182, T.183, G.184, K.185, T.186, S.187, N.300, P.322, G.385, R.386, R.389 Chain C: R.312 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:V.140, B:V.140, B:G.182, B:T.183, B:K.185, B:K.185, B:T.186, B:S.187, C:R.312 Salt bridges: B:K.185, B:R.386, B:R.386, C:K.288 AGS.3: 20 residues within 4Å: Chain C: S.138, L.139, Y.141, P.181, G.182, T.183, G.184, K.185, T.186, S.187, L.188, N.300, P.322, I.330, G.385, R.386, R.389 Chain D: K.288, D.311, R.312 12 PLIP interactions: 2 interactions with chain D, 10 interactions with chain C Hydrogen bonds: D:K.288, D:R.312, C:Y.141, C:Y.141, C:G.182, C:T.183, C:G.184, C:T.186, C:L.188, C:R.386 Salt bridges: C:R.386, C:R.386 AGS.4: 15 residues within 4Å: Chain D: S.138, L.139, V.140, P.181, G.182, T.183, G.184, K.185, T.186, S.187, L.188, I.330, G.385, R.386, R.389 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:V.140, D:V.140, D:G.182, D:T.183, D:G.184, D:K.185, D:T.186, D:L.188 Salt bridges: D:K.185, D:R.386, D:R.386 AGS.5: 17 residues within 4Å: Chain E: S.138, L.139, V.140, Y.141, G.182, T.183, G.184, K.185, T.186, S.187, D.252, N.300, I.330, G.385, R.386, R.389 Chain F: L.168 14 PLIP interactions: 13 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:V.140, E:V.140, E:G.182, E:T.183, E:G.184, E:K.185, E:T.186, E:S.187, E:S.187, F:N.167 Salt bridges: E:K.185, E:K.185, E:R.386, E:R.386

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alfieri, C. et al., Mechanism for remodelling of the cell cycle checkpoint protein MAD2 by the ATPase TRIP13. Nature (2018)

Release Date

2018-05-02

Peptides

Pachytene checkpoint protein 2 homolog: ABCDEF
MAD2L1-binding protein: G
Cell division cycle protein 20 homolog: H
Mitotic spindle assembly checkpoint protein MAD2A: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
P

H
Q

I
Z

Pachytene checkpoint protein 2 homolog

MAD2L1-binding protein

Cell division cycle protein 20 homolog

Mitotic spindle assembly checkpoint protein MAD2A

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