- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 10 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
PLC.2: 9 residues within 4Å:- Chain A: R.118, F.121, Y.194, I.198, L.206, Y.254, I.258, N.307, F.315
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.121, A:Y.194, A:I.198, A:L.206, A:I.258
- Hydrogen bonds: A:R.118
PLC.3: 7 residues within 4Å:- Chain A: F.210, T.214, W.217
- Chain B: I.271, T.274, V.275, Y.278
9 PLIP interactions:4 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:T.214, A:W.217, A:W.217, A:W.217, B:I.271, B:T.274, B:V.275, B:Y.278, B:Y.278
PLC.12: 9 residues within 4Å:- Chain B: R.118, F.121, Y.194, I.198, L.206, Y.254, I.258, N.307, F.315
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:F.121, B:Y.194, B:I.198, B:L.206, B:I.258
- Hydrogen bonds: B:R.118, B:Y.254
PLC.13: 7 residues within 4Å:- Chain B: F.210, T.214, W.217
- Chain C: I.271, T.274, V.275, Y.278
10 PLIP interactions:6 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:I.271, C:I.271, C:T.274, C:V.275, C:Y.278, C:Y.278, B:T.214, B:W.217, B:W.217, B:W.217
PLC.19: 9 residues within 4Å:- Chain C: R.118, F.121, Y.194, I.198, L.206, Y.254, I.258, N.307, F.315
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:F.121, C:Y.194, C:I.198, C:L.206, C:I.258
- Hydrogen bonds: C:R.118, C:Y.254
PLC.20: 7 residues within 4Å:- Chain C: F.210, T.214, W.217
- Chain D: I.271, T.274, V.275, Y.278
10 PLIP interactions:5 interactions with chain D, 5 interactions with chain C- Hydrophobic interactions: D:I.271, D:T.274, D:V.275, D:Y.278, D:Y.278, C:F.210, C:T.214, C:W.217, C:W.217, C:W.217
PLC.27: 9 residues within 4Å:- Chain D: R.118, F.121, Y.194, I.198, L.206, Y.254, I.258, N.307, F.315
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:F.121, D:Y.194, D:I.198, D:L.206, D:I.258
- Hydrogen bonds: D:R.118, D:Y.254
PLC.28: 8 residues within 4Å:- Chain D: F.210, T.214, W.217
- Chain E: F.267, I.271, T.274, V.275, Y.278
9 PLIP interactions:4 interactions with chain D, 5 interactions with chain E- Hydrophobic interactions: D:T.214, D:W.217, D:W.217, D:W.217, E:F.267, E:I.271, E:T.274, E:Y.278, E:Y.278
PLC.34: 9 residues within 4Å:- Chain E: R.118, F.121, Y.194, I.198, L.206, Y.254, I.258, N.307, F.315
6 PLIP interactions:6 interactions with chain E- Hydrophobic interactions: E:F.121, E:Y.194, E:I.198, E:L.206, E:I.258
- Hydrogen bonds: E:R.118
PLC.35: 7 residues within 4Å:- Chain A: I.271, T.274, V.275, Y.278
- Chain E: F.210, T.214, W.217
10 PLIP interactions:6 interactions with chain A, 4 interactions with chain E- Hydrophobic interactions: A:I.271, A:I.271, A:T.274, A:V.275, A:Y.278, A:Y.278, E:T.214, E:W.217, E:W.217, E:W.217
- 7 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 3 residues within 4Å:- Chain A: R.77, F.78, R.85
Ligand excluded by PLIPCL.5: 2 residues within 4Å:- Chain A: N.139, L.180
Ligand excluded by PLIPCL.6: 1 residues within 4Å:- Chain A: A.175
Ligand excluded by PLIPCL.14: 4 residues within 4Å:- Chain B: R.77, F.78, V.81, R.85
Ligand excluded by PLIPCL.21: 4 residues within 4Å:- Chain C: F.78, V.81, A.84, R.85
Ligand excluded by PLIPCL.29: 3 residues within 4Å:- Chain D: R.77, F.78, R.85
Ligand excluded by PLIPCL.36: 3 residues within 4Å:- Chain E: R.77, F.78, R.85
Ligand excluded by PLIP- 6 x NA: SODIUM ION(Non-functional Binders)
NA.7: 5 residues within 4Å:- Chain A: V.5, P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.68, A:I.73
NA.15: 5 residues within 4Å:- Chain B: V.5, P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.71, B:I.73
NA.22: 3 residues within 4Å:- Chain C: P.68, I.71, I.73
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:I.71, C:I.73
NA.25: 1 residues within 4Å:- Chain D: T.226
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:T.226, D:T.226, C:T.226
NA.30: 4 residues within 4Å:- Chain D: V.5, I.71, W.72, I.73
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:I.73
NA.37: 4 residues within 4Å:- Chain E: P.68, I.71, W.72, I.73
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:I.73
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
LMT.9: 4 residues within 4Å:- Ligands: LMT.10, LMT.17, LMT.24, LMT.39
No protein-ligand interaction detected (PLIP)LMT.10: 4 residues within 4Å:- Chain A: I.240, L.241
- Chain E: A.237
- Ligands: LMT.9
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain E- Hydrophobic interactions: A:I.240, A:L.241, E:A.237
LMT.17: 4 residues within 4Å:- Chain B: A.237, I.240, T.244
- Ligands: LMT.9
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.237, B:I.240, B:I.240
LMT.24: 6 residues within 4Å:- Chain B: A.237
- Chain C: I.233, A.237, I.240, L.241
- Ligands: LMT.9
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:I.233, C:A.237, C:I.240, C:I.240, C:L.241, B:A.237
LMT.32: 5 residues within 4Å:- Chain C: A.237
- Chain D: A.237, I.240, L.241, T.244
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:A.237, D:I.240, D:L.241, C:A.237
LMT.39: 6 residues within 4Å:- Chain D: A.237
- Chain E: A.237, I.240, L.241, T.244
- Ligands: LMT.9
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:A.237, E:I.240, E:L.241, D:A.237
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nemecz, A. et al., Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel. PLoS Biol. (2017)
- Release Date
- 2018-01-10
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 10 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nemecz, A. et al., Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel. PLoS Biol. (2017)
- Release Date
- 2018-01-10
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.