SMTL ID : 6f2c.1 (1 other biounit)

Methylglyoxal synthase MgsA from Bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-hexamer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: G.58, T.59, R.74, F.75 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.58, A:T.59, A:R.74 Water bridges: A:F.75, A:S.77 GOL.2: 5 residues within 4Å: Chain A: H.31, D.32, Q.108, P.109 Ligands: CL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.32 Water bridges: A:K.33 GOL.7: 9 residues within 4Å: Chain C: A.30, K.35, T.57, G.58, T.59, T.60, S.77, G.78, P.79 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:K.35, C:T.57, C:T.59, C:T.60, C:G.78 Water bridges: C:H.31, C:K.35, C:T.59, C:D.83 GOL.8: 5 residues within 4Å: Chain C: H.65, L.70, Q.71, I.72, R.74 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:L.70, C:Q.71, C:I.72 GOL.10: 10 residues within 4Å: Chain E: I.29, A.30, H.31, K.35, T.57, G.58, T.59, T.60, S.77, G.78 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:A.30, E:K.35, E:T.57, E:T.57, E:T.59, E:G.78 Water bridges: E:H.31, E:H.110 GOL.14: 5 residues within 4Å: Chain B: A.91 Chain F: R.74, F.75, Q.76, Q.85 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F Hydrogen bonds: B:A.91, F:Q.85 GOL.15: 4 residues within 4Å: Chain F: K.50, N.51, H.52, Q.71 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:K.50, F:Q.71

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: G.78 Ligands: GOL.2 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: K.35, T.57, G.58, T.59, S.77 Ligand excluded by PLIP CL.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: D.32, P.79 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain D: H.65, I.72 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain E: Q.71, I.72 Ligand excluded by PLIP CL.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain F: H.31, D.32, Q.108 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dickmanns, A. et al., Structural basis for the regulatory interaction of the methylglyoxal synthase MgsA with the carbon flux regulator Crh inBacillus subtilis. J. Biol. Chem. (2018)

Release Date

2018-03-07

Peptides

Methylglyoxal synthase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
B

D
F

E
C

F
E

Methylglyoxal synthase

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