SMTL ID : 6f4n.1 (1 other biounit)

Human JMJD5 in complex with MN and 2OG.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.176, D.178, H.255 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.176, A:D.178, A:H.255, H2O.2

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 13 residues within 4Å: Chain A: Y.127, W.165, S.173, H.176, D.178, N.182, L.184, K.191, H.255, V.257, S.267, W.269 Ligands: MN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.165, A:W.165, A:V.257 Hydrogen bonds: A:Y.127, A:W.165, A:S.173, A:N.182, A:S.267 Water bridges: A:S.173 Salt bridges: A:K.191, A:H.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilkins, S.E. et al., JMJD5 is a human arginyl C-3 hydroxylase. Nat Commun (2018)

Release Date

2018-04-04

Peptides

JmjC domain-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

JmjC domain-containing protein 5

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