SMTL ID : 6f5x.1

Crystal structure of the SYCP1 N-terminal head-to-head assembly in closed conformation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-tetramer

Ligands

8 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: M.3, L.5, S.6 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: Q.47 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain B: M.3, L.5, S.6 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain B: Q.47 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain C: M.3, L.5, S.6 Ligand excluded by PLIP IOD.8: 1 residues within 4Å: Chain C: Q.47 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain D: M.3, L.5, S.6 Ligand excluded by PLIP IOD.11: 1 residues within 4Å: Chain D: Q.47 Ligand excluded by PLIP

4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 2 residues within 4Å: Chain A: Y.13, A.16 No protein-ligand interaction detected (PLIP) PGE.6: 2 residues within 4Å: Chain B: Y.13, A.16 No protein-ligand interaction detected (PLIP) PGE.9: 2 residues within 4Å: Chain C: Y.13, A.16 No protein-ligand interaction detected (PLIP) PGE.12: 2 residues within 4Å: Chain D: Y.13, A.16 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunce, J.M. et al., Structural basis of meiotic chromosome synapsis through SYCP1 self-assembly. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-06-06

Peptides

Synaptonemal complex protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Synaptonemal complex protein 1