SMTL ID : 6f5z.1

Complex between the Haloferax volcanii Trm112 methyltransferase activator and the Hvo_0019 putative methyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

hetero-2-2-mer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: F.7, M.19, H.23, G.46, T.47, G.48, Y.51, D.69, G.70, S.71, M.74, G.92, D.93, F.94, M.110, E.111, A.112, Y.115 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.46, A:G.48, A:Y.51, A:G.70, A:D.93, A:D.93, A:F.94 Water bridges: A:M.110, A:A.117, A:A.117 Salt bridges: A:H.23 pi-Stacking: A:F.94 SAH.3: 19 residues within 4Å: Chain B: V.3, F.7, M.19, H.23, G.46, T.47, G.48, Y.51, D.69, G.70, S.71, M.74, G.92, D.93, F.94, M.110, E.111, A.112, Y.115 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.48, B:G.70, B:D.93, B:D.93, B:F.94, B:M.110 Water bridges: B:M.110, B:A.117 Salt bridges: B:H.23 pi-Stacking: B:F.94

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain B: D.105, H.106, K.131, P.132, G.133, G.134 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.105, B:H.106 GOL.4: 6 residues within 4Å: Chain C: M.6, D.7, L.9, L.18, L.20, L.35 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:L.9, C:L.20 Water bridges: C:L.18, C:L.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Tran, N. et al., Evolutionary insights into Trm112-methyltransferase holoenzymes involved in translation between archaea and eukaryotes. Nucleic Acids Res. (2018)

Release Date

2018-07-11

Peptides

24-sterol C-methyltransferase: AB
UPF0434 family protein: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

24-sterol C-methyltransferase

UPF0434 family protein