SMTL ID : 6f7h.1

Crystal structure of human AQP10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

16 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)(Post Translational Modification)

BNG.1: 13 residues within 4Å: Chain A: R.22, A.26, L.29, I.68, Y.71, V.72, G.73, G.74 Chain B: M.169, G.173, A.176, H.267 Ligands: BNG.8 Ligand excluded by PLIP BNG.2: 5 residues within 4Å: Chain A: L.223, F.235, S.236, G.240, W.242 Ligand excluded by PLIP BNG.3: 7 residues within 4Å: Chain A: R.181, N.182, Y.260, L.263, H.267 Chain D: V.72 Ligands: BNG.19 Ligand excluded by PLIP BNG.6: 10 residues within 4Å: Chain B: A.26, L.29, Y.71, V.72, G.73 Chain C: I.177, G.184, L.197, H.267 Ligands: BNG.17 Ligand excluded by PLIP BNG.7: 6 residues within 4Å: Chain B: F.235, S.236, G.240, W.242, W.243 Ligands: BNG.11 Ligand excluded by PLIP BNG.8: 14 residues within 4Å: Chain A: I.68, Y.71, G.74, N.75, G.188 Chain B: A.176, I.177, N.182, K.183, G.184, V.185, V.193, L.197 Ligands: BNG.1 Ligand excluded by PLIP BNG.9: 8 residues within 4Å: Chain B: S.77, V.92, R.94, L.178, D.179, R.180, R.181, Y.260 Ligand excluded by PLIP BNG.10: 1 residues within 4Å: Chain B: W.97 Ligand excluded by PLIP BNG.11: 6 residues within 4Å: Chain B: L.223, Y.226, V.227, P.232, F.235 Ligands: BNG.7 Ligand excluded by PLIP BNG.14: 11 residues within 4Å: Chain C: A.26, I.68, Y.71, V.72 Chain D: M.169, V.172, G.173, A.176, H.267 Ligands: BNG.16, BNG.21 Ligand excluded by PLIP BNG.15: 5 residues within 4Å: Chain C: F.235, S.236, G.240, W.242, W.243 Ligand excluded by PLIP BNG.16: 13 residues within 4Å: Chain C: I.68, Y.71, G.74, N.75, G.188 Chain D: A.176, I.177, N.182, K.183, G.184, V.185, V.193 Ligands: BNG.14 Ligand excluded by PLIP BNG.17: 11 residues within 4Å: Chain C: V.172, A.176, R.181, N.182, K.183, Y.260, L.263, V.264, H.267, H.268 Ligands: BNG.6 Ligand excluded by PLIP BNG.19: 12 residues within 4Å: Chain A: A.176, I.177, N.182, V.193, H.267 Chain D: A.26, L.29, Y.71, V.72, G.73, G.74 Ligands: BNG.3 Ligand excluded by PLIP BNG.20: 5 residues within 4Å: Chain D: L.223, F.235, G.240, W.242, W.243 Ligand excluded by PLIP BNG.21: 9 residues within 4Å: Chain C: V.72 Chain D: V.172, N.182, Y.260, L.263, V.264, H.267, H.268 Ligands: BNG.14 Ligand excluded by PLIP

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: V.66, N.82, L.170, L.174, N.214 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.82, A:N.214 Water bridges: A:P.212 GOL.5: 5 residues within 4Å: Chain A: S.63, L.64, V.192, G.195, M.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.63, A:V.192 GOL.12: 7 residues within 4Å: Chain B: L.34, V.66, I.70, L.81, N.82, L.170, N.214 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.82, B:N.214 Water bridges: B:P.212 GOL.13: 8 residues within 4Å: Chain B: L.60, L.64, T.67, V.192, G.195, M.196, L.199 Chain C: M.196 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.67, B:T.67 GOL.18: 6 residues within 4Å: Chain C: L.34, V.66, I.70, N.82, L.170, N.214 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.82, C:N.214 Water bridges: C:H.80 GOL.22: 6 residues within 4Å: Chain D: V.66, H.80, N.82, L.170, L.174, N.214 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.82, D:N.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gotfryd, K. et al., Human adipose glycerol flux is regulated by a pH gate in AQP10. Nat Commun (2018)

Release Date

2018-11-21

Peptides

Aquaporin-10: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Aquaporin-10