SMTL ID : 6f7i.1

human MALT1(329-728) IN COMPLEX WITH MLT-747

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

homo-dimer

Ligands

2 x CW5: 1-[2-chloranyl-7-[(1~{S})-1-methoxyethyl]pyrazolo[1,5-a]pyrimidin-6-yl]-3-(5-chloranyl-6-pyrrolidin-1-ylcarbonyl-pyridin-3-yl)urea(Non-covalent)

CW5.1: 19 residues within 4Å: Chain A: V.20, A.21, L.22, K.55, V.57, L.59, E.66, N.69, A.70, E.73, F.74, L.77, Q.255, W.256, A.259, Q.352, I.388, L.391, D.392 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.57, A:A.70, A:L.77, A:A.259, A:L.391 Hydrogen bonds: A:N.69, A:E.73, A:E.73, A:E.73, A:Q.255 CW5.5: 19 residues within 4Å: Chain B: V.20, A.21, L.22, K.55, V.57, L.59, E.66, N.69, A.70, E.73, F.74, L.77, Q.255, W.256, A.259, Q.352, I.388, L.391, M.393 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.57, B:A.70, B:L.77, B:Q.255, B:I.388 Hydrogen bonds: B:N.69, B:E.73, B:E.73, B:E.73

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: K.324, G.325, E.329 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.329 MG.3: 3 residues within 4Å: Chain A: E.328, Y.333, S.336 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.328

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: R.68, D.72, L.116, C.117, N.120, I.121 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.68, A:D.72, A:C.117, A:C.117, A:N.120, A:I.121 GOL.6: 7 residues within 4Å: Chain B: R.68, D.72, L.116, C.117, N.120, I.121, L.124 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.68, B:D.72, B:D.72, B:C.117, B:C.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quancard, J. et al., An allosteric MALT1 inhibitor is a molecular corrector rescuing function in an immunodeficient patient. Nat. Chem. Biol. (2019)

Release Date

2019-01-02

Peptides

Mucosa-associated lymphoid tissue lymphoma translocation protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mucosa-associated lymphoid tissue lymphoma translocation protein 1

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