SMTL ID : 6f8b.1

LasB bound to thiol based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.136, E.172, E.175, D.183, L.185 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.136, A:E.172, A:E.175, A:D.183, A:L.185, H2O.2

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.140, H.144, Y.155, E.164 Ligands: CXH.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.140, A:H.144, A:E.164

2 x CXH: ~{N}-(3,4-dichlorophenyl)-2-sulfanyl-ethanamide(Non-covalent)

CXH.3: 10 residues within 4Å: Chain A: H.140, E.141, H.144, Y.155, E.164, R.198, H.223, H.224 Ligands: ZN.2, CXH.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.223 Hydrogen bonds: A:R.198, A:R.198 pi-Stacking: A:H.223 CXH.4: 10 residues within 4Å: Chain A: N.112, A.113, F.129, V.137, H.140, E.141, I.186, L.197, R.198 Ligands: CXH.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.137, A:L.197 Hydrogen bonds: A:N.112 Halogen bonds: A:V.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kany, A.M. et al., Binding Mode Characterization and Early in Vivo Evaluation of Fragment-Like Thiols as Inhibitors of the Virulence Factor LasB from Pseudomonas aeruginosa. ACS Infect Dis (2018)

Release Date

2018-03-28

Peptides

Elastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elastase

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