SMTL ID : 6f9s.1

Crystal structure of the C-terminal RecA domain of DDX6 in complex with a conserved peptide from LSM14

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.03 Å

Oligo State

hetero-2-2-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.46, S.47, K.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.47 Salt bridges: A:K.70 SO4.2: 4 residues within 4Å: Chain A: P.115, K.116, L.117, T.120 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.116, A:L.117, A:T.120 SO4.3: 3 residues within 4Å: Chain C: S.46, S.47, K.70 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.47 Salt bridges: C:K.70 SO4.4: 4 residues within 4Å: Chain C: P.115, K.116, L.117, T.120 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.116, C:L.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brandmann, T. et al., Molecular architecture of LSM14 interactions involved in the assembly of mRNA silencing complexes. EMBO J. (2018)

Release Date

2018-03-21

Peptides

Probable ATP-dependent RNA helicase DDX6: AC
Cytokinesis, Apoptosis, RNA-associated: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Probable ATP-dependent RNA helicase DDX6

Cytokinesis, Apoptosis, RNA-associated