SMTL ID : 6faq.1

Structure of H. salinarum RosR (vng0258) grown from KBr

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

22 x BR: BROMIDE ION(Non-covalent)

BR.1: 4 residues within 4Å: Chain A: Y.32, L.34, A.35, R.38 Ligand excluded by PLIP BR.2: 4 residues within 4Å: Chain A: D.104, R.105, R.108 Chain B: F.85 Ligand excluded by PLIP BR.3: 6 residues within 4Å: Chain A: Y.32, G.33, L.34, Y.54, T.75, N.76 Ligand excluded by PLIP BR.4: 4 residues within 4Å: Chain A: A.17, K.20 Chain B: A.17, K.20 Ligand excluded by PLIP BR.5: 3 residues within 4Å: Chain A: R.31, Y.32, A.35 Ligand excluded by PLIP BR.6: 5 residues within 4Å: Chain A: T.16, A.17, F.18, R.52 Ligands: BR.11 Ligand excluded by PLIP BR.7: 4 residues within 4Å: Chain A: A.103, R.106 Chain B: A.117, L.120 Ligand excluded by PLIP BR.8: 5 residues within 4Å: Chain A: D.11, A.12, L.15, K.63, L.65 Ligand excluded by PLIP BR.9: 2 residues within 4Å: Chain A: R.13, W.94 Ligand excluded by PLIP BR.10: 4 residues within 4Å: Chain A: H.50, G.51, Y.54, P.55 Ligand excluded by PLIP BR.11: 6 residues within 4Å: Chain A: T.16, A.17 Chain B: T.16, A.17 Ligands: BR.6, BR.20 Ligand excluded by PLIP BR.12: 5 residues within 4Å: Chain A: D.91, L.92, T.95 Chain B: T.95 Ligands: BR.22 Ligand excluded by PLIP BR.13: 3 residues within 4Å: Chain A: V.48, N.49, R.52 Ligand excluded by PLIP BR.14: 4 residues within 4Å: Chain A: F.85 Chain B: D.104, R.105, R.108 Ligand excluded by PLIP BR.15: 4 residues within 4Å: Chain B: Y.32, L.34, A.35, R.38 Ligand excluded by PLIP BR.16: 6 residues within 4Å: Chain B: Y.32, G.33, L.34, Y.54, T.75, N.76 Ligand excluded by PLIP BR.17: 3 residues within 4Å: Chain B: R.31, Y.32, A.35 Ligand excluded by PLIP BR.18: 5 residues within 4Å: Chain B: D.11, A.12, L.15, K.63, L.65 Ligand excluded by PLIP BR.19: 4 residues within 4Å: Chain A: A.117, L.120 Chain B: A.103, R.106 Ligand excluded by PLIP BR.20: 5 residues within 4Å: Chain B: T.16, A.17, F.18, R.52 Ligands: BR.11 Ligand excluded by PLIP BR.21: 3 residues within 4Å: Chain B: E.93, W.94, S.97 Ligand excluded by PLIP BR.22: 5 residues within 4Å: Chain A: T.95 Chain B: D.91, L.92, T.95 Ligands: BR.12 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.23: 3 residues within 4Å: Chain B: E.29, R.31, E.39 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.31, B:R.31 Salt bridges: B:R.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kutnowski, N. et al., The 3-D structure of VNG0258H/RosR - A haloarchaeal DNA-binding protein in its ionic shell. J. Struct. Biol. (2018)

Release Date

2018-08-22

Peptides

DNA binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA binding protein

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