SMTL ID : 6fb2.1

Crystal Structure of a Tailored I-CreI Homing Endonuclease Protein (3115 variant) in complex with its target DNA (Haemoglobin beta subunit gene) in the presence of Manganese

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-1-1-mer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 8 residues within 4Å: Chain A: D.19 Chain B: D.19 Chain C: C.14 Chain D: G.14 Chain E: A.1 Chain F: A.1 Ligands: MN.2, MN.3 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:D.19, A:D.19 MN.2: 5 residues within 4Å: Chain A: S.18 Chain B: D.19 Chain D: G.14 Chain E: A.1 Ligands: MN.1 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.19, A:S.18, H2O.1 MN.3: 6 residues within 4Å: Chain A: D.19 Chain B: G.18 Chain C: A.13, C.14 Chain F: A.1 Ligands: MN.1 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:G.18, A:D.19, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prieto, J. et al., Understanding the indirect DNA read-out specificity of I-CreI Meganuclease. Sci Rep (2018)

Release Date

2018-07-18

Peptides

DNA endonuclease I-CreI: A
DNA endonuclease I-CreI: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA endonuclease I-CreI

DNA endonuclease I-CreI

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