SMTL ID : 6fd3.1

Thiophosphorylated PAK3 kinase domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: N.148, D.161 Ligands: MG.2, ADP.3 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.161, H2O.2, H2O.6 MG.2: 3 residues within 4Å: Chain A: D.161 Ligands: MG.1, ADP.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.161, A:D.161, H2O.1, H2O.3, H2O.6

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 21 residues within 4Å: Chain A: I.30, G.31, Q.32, G.33, A.34, S.35, G.36, V.38, A.51, K.53, M.98, E.99, Y.100, L.101, S.105, D.147, N.148, L.150, D.161 Ligands: MG.1, MG.2 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:G.33, A:A.34, A:S.35, A:G.36, A:E.99, A:L.101, A:S.105, A:S.105 Water bridges: A:Q.32, A:Q.32, A:S.35, A:S.35, A:E.69, A:S.105, A:D.143, A:D.147, A:N.148, A:N.148, A:N.148, A:D.161, A:G.163 Salt bridges: A:K.53, A:K.53

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 9 residues within 4Å: Chain A: Q.32, S.35, G.36, T.37, Q.54, M.55, N.56, Q.59, Q.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.32, A:N.56, A:N.56, A:Q.60 EDO.5: 6 residues within 4Å: Chain A: M.115, D.116, E.117, I.120, V.212, L.244 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sorrell, F.J. et al., Solution structures and biophysical analysis of full-length group A PAKs reveal they are monomeric and auto-inhibited incis. Biochem.J. (2019)

Release Date

2018-01-03

Peptides

Serine/threonine-protein kinase PAK 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase PAK 3