SMTL ID : 6fer.3 (11 other biounits)

Crystal Structure of human DDR2 kinase in complex with 2-[4,5-difluoro-2-oxo-1'-(1H-pyrazolo[3,4-b]pyridine-5-carbonyl)spiro[indole-3,4'-piperidine]-1-yl]-N-(2,2,2-trifluoroethyl)acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

monomer

Ligands

1 x D6Q: 2-[4,5-bis(fluoranyl)-2-oxidanylidene-1'-(1~{H}-pyrazolo[3,4-b]pyridin-5-ylcarbonyl)spiro[indole-3,4'-piperidine]-1-yl]-~{N}-[2,2,2-tris(fluoranyl)ethyl]ethanamide(Non-covalent)

D6Q.1: 22 residues within 4Å: Chain A: L.17, V.25, A.54, K.56, E.73, M.77, L.80, I.85, I.86, M.100, T.102, E.103, Y.104, M.105, L.149, F.154, H.156, L.165, I.174, A.175, D.176, F.177 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.17, A:V.25, A:A.54, A:L.165, A:F.177 Hydrogen bonds: A:M.105, A:M.105, A:D.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, H. et al., DNA-Encoded Library-Derived DDR1 Inhibitor Prevents Fibrosis and Renal Function Loss in a Genetic Mouse Model of Alport Syndrome. Acs Chem.Biol. (2019)

Release Date

2018-11-28

Peptides

Discoidin domain-containing receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Discoidin domain-containing receptor 2

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