SMTL ID : 6ffa.1

FMDV Leader protease bound to substrate ISG15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: S.128, N.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.128 Water bridges: A:S.128 GOL.2: 5 residues within 4Å: Chain A: R.33, E.36, E.37, P.38, Y.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.33, A:R.33 GOL.3: 1 residues within 4Å: Chain A: W.42 No protein-ligand interaction detected (PLIP) GOL.4: 4 residues within 4Å: Chain A: E.59, E.65, L.66, H.67 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.65, A:E.65, A:H.67 Water bridges: A:E.59, A:E.59, A:E.65, A:E.68 GOL.8: 6 residues within 4Å: Chain A: E.65 Chain B: K.31, D.43, F.45, W.46, R.76 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:E.65, B:K.31, B:D.43, B:R.76 Water bridges: B:K.31

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: Y.14, R.33, S.45 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.14, A:S.45 Water bridges: A:R.33 Salt bridges: A:R.33 SO4.6: 3 residues within 4Å: Chain A: L.52, K.56, H.67 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.56, A:H.67 SO4.7: 2 residues within 4Å: Chain A: K.116, W.142 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.116 Salt bridges: A:K.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swatek, K.N. et al., Irreversible inactivation of ISG15 by a viral leader protease enables alternative infection detection strategies. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-02-21

Peptides

Lbpro: A
Ubiquitin-like protein ISG15: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lbpro

Ubiquitin-like protein ISG15

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