SMTL ID : 6ffe.1

Human BRD2 C-terminal bromodomain with 2-((4-acetyl-3-cyclopropyl-3,4-dihydroquinoxalin-1(2H)-yl)methyl)benzoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 5 residues within 4Å: Chain A: S.7, L.10, K.11, N.14 Ligands: PEG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.11 Water bridges: A:K.11 PEG.2: 2 residues within 4Å: Chain A: K.11 Ligands: PEG.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.14 Water bridges: A:K.11, A:K.11, A:K.11, A:K.11

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104 EDO.4: 3 residues within 4Å: Chain A: K.62, D.67, E.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:K.62, A:E.73

1 x D7Q: 2-((4-acetyl-3-cyclopropyl-3,4-dihydroquinoxalin-1(2H)-yl)methyl)benzoic acid(Non-covalent)

D7Q.5: 11 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.43, Y.46, C.85, Y.88, N.89, V.95, M.98 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.30, A:W.30, A:F.32, A:V.36, A:L.43, A:Y.46, A:Y.88, A:Y.88, A:V.95 Hydrogen bonds: A:N.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Law, R.P. et al., Discovery of Tetrahydroquinoxalines as Bromodomain and Extra-Terminal Domain (BET) Inhibitors with Selectivity for the Second Bromodomain. J.Med.Chem. (2018)

Release Date

2019-01-30

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

Related Entries With Identical Sequence