SMTL ID : 6fff.1

Human BRD2 C-terminal bromodomain with (S)-5-(1-acetyl-2-cyclopropyl-4-(2-(hydroxymethyl)benzyl)-1,2,3,4-tetrahydroquinoxalin-6-yl)pyrimidine-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 4 residues within 4Å: Chain A: L.6, N.14, E.64, R.66 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.14 Water bridges: A:K.11, A:N.14, A:N.14, A:R.66 Salt bridges: A:R.66

1 x D7H: (S)-5-(1-acetyl-2-cyclopropyl-4-(2-(hydroxymethyl)benzyl)-1,2,3,4-tetrahydroquinoxalin-6-yl)pyrimidine-2-carboxamide(Non-covalent)

D7H.3: 13 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, Y.46, C.85, Y.88, N.89, H.93, V.95, M.98 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.30, A:W.30, A:F.32, A:V.36, A:L.43, A:Y.46, A:Y.88, A:Y.88, A:V.95 Hydrogen bonds: A:N.89 pi-Stacking: A:W.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Law, R.P. et al., Discovery of Tetrahydroquinoxalines as Bromodomain and Extra-Terminal Domain (BET) Inhibitors with Selectivity for the Second Bromodomain. J.Med.Chem. (2018)

Release Date

2019-01-30

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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