SMTL ID : 6fg3.1

Structure of Ryanodine receptor 1 in nanodiscs in the presence of calcium, ATP and ryanodine

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: C.4958, I.4960, H.4983 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.4958, A:H.4983 ZN.3: 3 residues within 4Å: Chain B: C.4958, I.4960, H.4983 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.4958, B:H.4983 ZN.5: 3 residues within 4Å: Chain C: C.4958, I.4960, H.4983 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.4958, C:H.4983 ZN.7: 3 residues within 4Å: Chain D: C.4958, I.4960, H.4983 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.4958, D:H.4983

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.3893, E.3967, T.5001, E.5002 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.3967, A:T.5001, A:E.5002 CA.4: 4 residues within 4Å: Chain B: E.3893, E.3967, T.5001, E.5002 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.3967, B:T.5001, B:E.5002 CA.6: 4 residues within 4Å: Chain C: E.3893, E.3967, T.5001, E.5002 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.3967, C:T.5001, C:E.5002 CA.8: 4 residues within 4Å: Chain D: E.3893, E.3967, T.5001, E.5002 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.3967, D:T.5001, D:E.5002

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Willegems, K. et al., Influence of Lipid Mimetics on Gating of Ryanodine Receptor. Structure (2018)

Release Date

2018-08-08

Peptides

Ryanodine receptor 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Ryanodine receptor 1