SMTL ID : 6fg9.1

Mouse SORCS2 ectodomain (sortilin related VPS10 domain containing receptor 2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.20 Å

Oligo State

homo-dimer

Ligands

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.44, R.574 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.44 NAG.2: 8 residues within 4Å: Chain A: N.248, R.249 Chain B: Y.763, V.781, L.782, T.863, P.864, E.865 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.249, B:E.865 NAG.3: 4 residues within 4Å: Chain A: D.696, T.699, N.716, L.719 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.719 Hydrogen bonds: A:T.699, A:T.699 NAG.4: 2 residues within 4Å: Chain A: E.775, N.777 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.775 NAG.5: 1 residues within 4Å: Chain A: N.214 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain B: N.44, R.574 No protein-ligand interaction detected (PLIP) NAG.7: 4 residues within 4Å: Chain B: Y.213, N.214, C.215, S.216 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.213, B:C.215 NAG.8: 3 residues within 4Å: Chain B: K.470, I.471, N.486 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.470, B:I.471 NAG.9: 3 residues within 4Å: Chain B: L.698, N.716, L.719 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain B: E.775, N.777 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain A: Q.801 Chain B: N.788 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leloup, N. et al., Structural insights into SorCS2-Nerve Growth Factor complex formation. Nat Commun (2018)

Release Date

2018-08-01

Peptides

VPS10 domain-containing receptor SorCS2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VPS10 domain-containing receptor SorCS2

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