SMTL ID : 6fh2.1

Protein arginine kinase McsB in the AMP-PN-bound state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

1 x AN2: AMP PHOSPHORAMIDATE(Non-covalent)

AN2.1: 18 residues within 4Å: Chain A: S.30, R.32, R.34, H.95, I.97, S.98, P.99, R.129, R.180, S.182, V.183, M.184, R.211, T.213, Y.214, G.215, E.216, Q.226 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.30, A:R.32, A:R.32, A:R.32, A:R.34, A:R.34, A:R.129, A:R.180, A:S.182, A:T.213, A:E.216, A:Q.226 Salt bridges: A:R.32, A:R.180, A:R.211

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: H.95, M.184, I.321 No protein-ligand interaction detected (PLIP) EDO.3: 6 residues within 4Å: Chain A: V.14, S.15, M.18, K.94, L.96, E.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.15, A:S.15 EDO.4: 5 residues within 4Å: Chain A: L.35, R.37, S.147, D.150, D.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.37, A:D.151 EDO.5: 4 residues within 4Å: Chain A: T.12, A.13, V.14, E.318 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.13, A:V.14, A:V.14 EDO.6: 5 residues within 4Å: Chain B: Y.214, L.221, S.289, T.323, Q.324 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.214, B:T.323 EDO.7: 3 residues within 4Å: Chain B: R.34, R.129, R.180 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.34, B:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suskiewicz, M.J. et al., Structure of McsB, a protein kinase for regulated arginine phosphorylation. Nat.Chem.Biol. (2019)

Release Date

2019-02-06

Peptides

Protein-arginine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein-arginine kinase

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