SMTL ID : 6fhb.1

Death-associated Protein Kinase 1 (DAPK1) catalytic and auto-regulatory domains with S289A and S308E mutations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: K.72, H.83 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: F.239, R.256 Ligand excluded by PLIP CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: I.180, F.181, G.182 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 7 residues within 4Å: Chain A: T.18, G.19, E.20, K.32, C.33, R.34, Q.41 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.17, A:Q.41 Water bridges: A:K.32 Salt bridges: A:K.32

1 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 3 residues within 4Å: Chain A: K.45, I.47, E.67 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.67, H2O.7

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 7 residues within 4Å: Chain A: A.43, K.45, I.80, E.97, V.99, I.163, D.164 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.45, A:E.97, A:V.99, A:D.164 Water bridges: A:F.165

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 4 residues within 4Å: Chain A: V.29, F.46, K.48, D.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.48, A:K.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huart, A.-S. et al., Molecular mechanisms behind DAPK regulation: how phosphorylation switches work. To Be Published

Release Date

2019-01-30

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1