SMTL ID : 6fhj.1

Structural dynamics and catalytic properties of a multi-modular xanthanase, native.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.189, D.191, N.193, I.195, D.197, D.200 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.189, A:D.191, A:I.195, A:D.197, A:D.200 CA.2: 4 residues within 4Å: Chain A: E.95, D.98, E.99, N.122 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.98, A:D.98, A:E.99, H2O.15, H2O.16 CA.3: 6 residues within 4Å: Chain A: D.137, D.237, V.239, N.242, D.244, D.245 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.137, A:D.237, A:V.239, A:D.244, A:D.245 CA.4: 5 residues within 4Å: Chain A: T.402, D.405, E.406, Y.639, S.640 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.402, A:E.406, A:S.640, H2O.4, H2O.14 CA.5: 3 residues within 4Å: Chain A: E.921, E.923, X.1007 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.921, A:E.923, A:E.923, A:X.1007

3 x NA: SODIUM ION(Non-functional Binders)

NA.6: 3 residues within 4Å: Chain A: N.471, F.472, D.474 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.471, A:F.472 NA.7: 4 residues within 4Å: Chain A: T.816, D.844, Q.848, D.899 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.816, A:D.844 NA.8: 3 residues within 4Å: Chain A: D.661, T.697, D.805 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.805, A:D.805

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 4 residues within 4Å: Chain A: M.404, T.407, G.410, V.411 Ligand excluded by PLIP

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 6 residues within 4Å: Chain A: W.55, P.459, W.460, S.513, S.514, P.515 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.459 Water bridges: A:K.57 PEG.11: 6 residues within 4Å: Chain A: Y.337, L.338, L.339, T.340, G.341, V.380 No protein-ligand interaction detected (PLIP)

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.12: 5 residues within 4Å: Chain A: Q.587, P.588, E.589, R.917, V.924 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.587 Salt bridges: A:R.917, A:R.917

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moroz, O.V. et al., Structural Dynamics and Catalytic Properties of a Multimodular Xanthanase. Acs Catalysis (2018)

Release Date

2018-08-29

Peptides

protein,protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

protein,protein

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