SMTL ID : 6fhu.2 (3 other biounits)

Crystal structure of BAZ2A PHD zinc finger in complex with H3 3-mer peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- 9AT: ALA-ARG-TAM(Non-covalent)

ALA-ARG-9AT.1: 9 residues within 4Å: Chain A: D.18, E.19, L.21, L.22, L.23, V.43, P.44, E.45, G.46 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.22, A:V.43 Hydrogen bonds: A:L.21, A:L.23, A:G.46 Water bridges: A:G.46

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.9, C.12, H.32, C.35 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:C.12, A:H.32, A:C.35 ZN.3: 4 residues within 4Å: Chain A: C.24, C.27, C.50, C.53 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.24, A:C.27, A:C.50, A:C.53

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 1 residues within 4Å: Chain A: R.37 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.37, A:R.37, A:R.37 Salt bridges: A:R.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amato, A. et al., Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach. ACS Chem. Biol. (2018)

Release Date

2018-03-21

Peptides

Bromodomain adjacent to zinc finger domain protein 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain adjacent to zinc finger domain protein 2A

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