SMTL ID : 6fhw.1 (1 other biounit)

Structure of Hormoconis resinae Glucoamylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

monomer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: Q.44, L.47, N.99, T.101, L.102 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.44 NAG-NAG.2: 5 residues within 4Å: Chain A: N.427, S.429, P.441, L.442, I.445 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.441 NAG-NAG.3: 3 residues within 4Å: Chain A: T.494, N.500, T.502 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain A: N.514, R.552, D.603, D.604, A.605 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.4: 14 residues within 4Å: Chain A: W.199, N.200, S.202, S.213, F.251, S.254, W.256, N.257, V.262, I.265, N.266, C.481, S.482, A.483 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.254, A:N.257

1 x GLC- GLC- AC1: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose

GLC-GLC-AC1.6: 17 residues within 4Å: Chain A: A.67, Y.76, W.80, R.82, D.83, P.148, W.149, G.150, L.206, W.207, E.208, E.209, R.335, Y.341, W.347, E.432, W.449 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.76, A:Y.76, A:W.149 Hydrogen bonds: A:R.82, A:R.82, A:R.82, A:E.209, A:R.335, A:R.335, A:G.150

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 5 residues within 4Å: Chain A: W.535, S.568, Q.570, Y.583, N.587 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.568, A:Q.570, A:N.587 NAG.8: 2 residues within 4Å: Chain A: N.528, V.566 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roth, C. et al., Structural insight into industrially relevant glucoamylases: flexible positions of starch-binding domains. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-05-09

Peptides

Glucoamylase P: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucoamylase P

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