SMTL ID : 6fi2.1

VexL: A periplasmic depolymerase provides new insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

monomer

Ligands

1 x DJB- DJB- DJE: 2-acetamido-2-deoxy-alpha-D-galactopyranuronic acid-(1-4)-3-O-acetyl-2-acetamido-2-deoxy-alpha-D-galactopyranuronic acid-(1-4)-3-O-acetyl-2-acetamido-2-deoxy-alpha-D-galactopyranuronic acid

DJB-DJB-DJE.1: 13 residues within 4Å: Chain A: K.195, Q.231, R.232, R.235, F.253, Y.254, N.292, Y.295, Y.298, I.301, R.305, L.308, S.313 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.231, A:Y.295, A:K.195, A:R.232 Water bridges: A:Q.231, A:S.313 Salt bridges: A:R.232, A:R.235

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 4 residues within 4Å: Chain A: T.203, S.204, K.205, Q.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.205, A:Q.209 Water bridges: A:N.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liston, S.D. et al., Periplasmic depolymerase provides insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-05-02

Peptides

VexL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VexL