SMTL ID : 6fig.1

Crystal structure of the ANX1 ectodomain from Arabidopsis thaliana

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: Y.94, N.107, I.112, K.145, Y.146, N.382, E.384 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 9 residues within 4Å: Chain A: L.264, K.265, S.266, N.267, Y.302, N.305, T.307, Q.348, T.350 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.302 Hydrogen bonds: A:N.305 NAG-NAG.4: 6 residues within 4Å: Chain B: Y.94, N.107, I.112, Y.146, N.382, E.384 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 8 residues within 4Å: Chain B: L.264, K.265, S.266, N.267, Y.302, N.305, T.307, Q.348 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.302 Hydrogen bonds: B:N.305

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.3: 4 residues within 4Å: Chain A: N.277, D.337, A.338, N.339 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.339, A:D.337, A:N.339 Water bridges: A:A.338

4 x CA: CALCIUM ION(Non-covalent)

CA.6: 6 residues within 4Å: Chain A: N.192, V.193, I.249, T.252, A.253, N.365 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:V.193, A:I.249, A:T.252, A:T.252, A:N.365 CA.7: 5 residues within 4Å: Chain A: S.7, C.8, P.51, T.54, N.154 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.7, A:P.51, A:T.54, A:T.54, A:N.154 CA.9: 5 residues within 4Å: Chain B: S.7, C.8, P.51, T.54, N.154 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:S.7, B:C.8, B:P.51, B:T.54, B:T.54, B:N.154 CA.10: 5 residues within 4Å: Chain B: N.192, V.193, I.249, T.252, N.365 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:V.193, B:I.249, B:T.252, B:T.252, B:N.365

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 5 residues within 4Å: Chain A: L.4, A.5, K.21, W.22, E.23 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.5, A:W.22, A:E.23 Water bridges: A:D.3, A:L.4

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.11: 2 residues within 4Å: Chain B: K.276, N.277 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.277

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.12: 4 residues within 4Å: Chain B: W.320, T.321, M.328, Y.329 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.320 Water bridges: B:Y.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moussu, S. et al., Crystal structures of two tandem malectin-like receptor kinases involved in plant reproduction. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-07-11

Peptides

Receptor-like protein kinase ANXUR1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Receptor-like protein kinase ANXUR1