SMTL ID : 6fil.1

DDR1, 2-[8-(1H-indazole-5-carbonyl)-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]decan-3-yl]-N-methylacetamide, 1.730A, P212121, Rfree=24.5%

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x D6W: 2-[8-(2~{H}-indazol-5-ylcarbonyl)-4-oxidanylidene-1-phenyl-1,3,8-triazaspiro[4.5]decan-3-yl]-~{N}-methyl-ethanamide(Non-covalent)

D6W.1: 19 residues within 4Å: Chain A: L.24, V.32, A.61, K.63, E.80, M.84, L.87, I.93, M.107, I.108, T.109, D.110, Y.111, M.112, L.175, I.184, A.185, D.186, F.187 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.24, A:K.63, A:M.107, A:T.109, A:L.175, A:F.187 Hydrogen bonds: A:D.110, A:M.112, A:D.186 Water bridges: A:G.115, A:G.115, A:D.186

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: F.247, G.248, Q.249 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, H. et al., DNA-Encoded Library-Derived DDR1 Inhibitor Prevents Fibrosis and Renal Function Loss in a Genetic Mouse Model of Alport Syndrome. Acs Chem.Biol. (2019)

Release Date

2018-11-28

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epithelial discoidin domain-containing receptor 1

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