SMTL ID : 6fio.1

DDR1, 2-[1'-(1H-indazole-5-carbonyl)-4-methyl-2-oxospiro[indole-3,4'-piperidine]-1-yl]-N-(2,2,2-trifluoroethyl)acetamide, 1.990A, P6522, Rfree=27.7%

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x DJH: 2-[1'-(1~{H}-indazol-5-ylcarbonyl)-4-methyl-2-oxidanylidene-spiro[indole-3,4'-piperidine]-1-yl]-~{N}-[2,2,2-tris(fluoranyl)ethyl]ethanamide(Non-covalent)

DJH.1: 21 residues within 4Å: Chain A: L.24, V.32, A.61, K.63, E.80, M.84, L.87, I.92, I.93, M.107, T.109, D.110, Y.111, M.112, F.164, H.166, L.175, I.184, A.185, D.186, F.187 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.24, A:V.32, A:A.61, A:K.63, A:M.107, A:T.109, A:L.175, A:F.187 Hydrogen bonds: A:M.112, A:M.112, A:D.186 Water bridges: A:E.80, A:E.80, A:G.115, A:G.115 pi-Cation interactions: A:K.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, H. et al., DNA-Encoded Library-Derived DDR1 Inhibitor Prevents Fibrosis and Renal Function Loss in a Genetic Mouse Model of Alport Syndrome. Acs Chem.Biol. (2019)

Release Date

2018-11-28

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epithelial discoidin domain-containing receptor 1

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