SMTL ID : 6fiq.1

DDR1, 1-(1H-indazole-5-carbonyl)-5'-methoxy-1'-[2-oxo-2-[(2S)-2-(trifluoromethyl)pyrrolidin-1-yl]ethyl]spiro[piperidine-4,3'-pyrrolo[3,2-b]pyridine]-2'-one, 1.790A, P212121, Rfree=23.8%

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x DJW: 1-(1~{H}-indazol-5-ylcarbonyl)-5'-methoxy-1'-[2-oxidanylidene-2-[(2~{S})-2-(trifluoromethyl)pyrrolidin-1-yl]ethyl]spiro[piperidine-4,3'-pyrrolo[3,2-b]pyridine]-2'-one(Non-covalent)

DJW.1: 20 residues within 4Å: Chain A: V.32, A.61, K.63, E.80, I.83, M.84, L.87, I.93, M.107, T.109, D.110, Y.111, M.112, F.164, H.166, L.175, I.184, A.185, D.186, F.187 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.32, A:I.83, A:L.87, A:F.164, A:L.175, A:F.187 Hydrogen bonds: A:M.112, A:M.112, A:D.186 Water bridges: A:G.115, A:G.115 pi-Cation interactions: A:K.63 Halogen bonds: A:I.184

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: F.247, G.248, Q.249 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, H. et al., DNA-Encoded Library-Derived DDR1 Inhibitor Prevents Fibrosis and Renal Function Loss in a Genetic Mouse Model of Alport Syndrome. Acs Chem.Biol. (2019)

Release Date

2018-11-28

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epithelial discoidin domain-containing receptor 1

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