SMTL ID : 6fj4.1

Structure of FAE solved by SAD from data collected at the peak of the Selenium absorption edge on ID30B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

5 x CD: CADMIUM ION(Non-covalent)

CD.1: 3 residues within 4Å: Chain A: C.21, H.84, M.87 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.21, A:H.84 CD.2: 5 residues within 4Å: Chain A: E.92, H.274, E.277, H.281, H.283 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.92, A:H.274, A:E.277, A:H.281, A:H.283 CD.3: 1 residues within 4Å: Chain A: E.205 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.205, A:E.205, H2O.7 CD.4: 2 residues within 4Å: Chain A: H.145, H.278 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.145, H2O.1, H2O.7, H2O.7, H2O.7 CD.5: 2 residues within 4Å: Chain A: H.279 Ligands: SO4.8 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.279, H2O.4

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: I.35, N.36, N.105, N.110 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.36, A:N.105 Water bridges: A:N.110, A:N.110 GOL.7: 5 residues within 4Å: Chain A: E.124, S.125, K.126, Y.127, S.128 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.125 Water bridges: A:Y.49, A:E.124, A:K.126, A:A.131

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 3 residues within 4Å: Chain A: K.53, H.279 Ligands: CD.5 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.53, A:H.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCarthy, A.A. et al., ID30B - a versatile beamline for macromolecular crystallography experiments at the ESRF. J Synchrotron Radiat (2018)

Release Date

2018-02-07

Peptides

Endo-1,4-beta-xylanase Y: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-1,4-beta-xylanase Y