SMTL ID : 6fkn.1 (1 other biounit)

Drosophila Plexin A in complex with Semaphorin 1b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 8 residues within 4Å: Chain B: R.254, N.256, S.258, V.259, G.261, E.262, Y.266, A.367 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.261, B:G.261

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 6 residues within 4Å: Chain B: E.36, F.37, L.39, N.48, I.57, Y.89 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: E.82, N.143, S.145, I.146 No protein-ligand interaction detected (PLIP) NAG.4: 1 residues within 4Å: Chain A: N.161 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.161 NAG.5: 3 residues within 4Å: Chain A: N.90, R.106, P.108 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rozbesky, D. et al., Structural basis of semaphorin-plexin cis interaction. Embo J. (2020)

Release Date

2019-02-06

Peptides

Plexin A, isoform A: A
MIP07328p: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Plexin A, isoform A

MIP07328p

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