SMTL ID : 6fkw.2 (1 other biounit)

Europium-containing methanol dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x EU: EUROPIUM ION(Non-covalent)

EU.1: 5 residues within 4Å: Chain A: E.172, N.256, D.299, D.301 Ligands: PQQ.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.172, A:E.172, A:D.301, A:D.301 EU.3: 5 residues within 4Å: Chain B: E.172, N.256, D.299, D.301 Ligands: PQQ.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.172, B:E.172, B:D.299, B:D.301

2 x PQQ: PYRROLOQUINOLINE QUINONE(Non-covalent)

PQQ.2: 22 residues within 4Å: Chain A: E.55, C.104, C.105, V.108, R.110, T.154, S.169, G.170, G.171, E.172, T.236, W.238, S.255, N.256, D.299, D.301, R.326, D.388, W.467, G.531, W.532 Ligands: EU.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:W.532 Hydrogen bonds: A:R.110, A:T.154, A:S.169, A:S.169, A:G.170, A:G.171, A:S.255, A:R.326, A:R.326, A:W.532 Water bridges: A:E.172, A:E.172 Salt bridges: A:R.110, A:R.110 pi-Stacking: A:W.238, A:W.238, A:W.238 PQQ.4: 21 residues within 4Å: Chain B: E.55, C.104, C.105, V.108, R.110, T.154, S.169, G.170, G.171, E.172, T.236, W.238, N.256, D.299, D.301, R.326, D.388, W.467, G.531, W.532 Ligands: EU.3 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:W.238, B:W.467, B:W.532 Hydrogen bonds: B:R.110, B:S.169, B:S.169, B:G.170, B:G.171, B:E.172, B:R.326, B:R.326, B:W.532 Water bridges: B:C.104, B:F.533 Salt bridges: B:R.110, B:R.110 pi-Stacking: B:W.238, B:W.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jahn, B. et al., Similar but not the same: First Kinetic and Structural Analyses of a Methanol Dehydrogenase Containing a Europium Ion in the Active Site. Chembiochem (2018)

Release Date

2018-03-21

Peptides

Methanol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Methanol dehydrogenase

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