SMTL ID : 6fky.2 (1 other biounit)

Crystal structure of zebrafish Sirtuin 5 in complex with 3-(benzylthio)succinyl-CPS1 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.141, C.144, C.182, C.187 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.141, A:C.144, A:C.182, A:C.187

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 10 residues within 4Å: Chain A: A.57, A.61, Y.77, R.80, H.133, V.196, W.197, F.198, E.200, Y.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.200 Salt bridges: A:R.80 pi-Cation interactions: A:F.198

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: D.203, D.205 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.203, A:D.205

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: S.37, Q.115, N.116, I.117, D.118 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.37, A:Q.115, A:I.117, A:D.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kalbas, D. et al., Potent and Selective Inhibitors of Human Sirtuin 5. J. Med. Chem. (2018)

Release Date

2018-03-21

Peptides

NAD-dependent protein deacylase sirtuin-5, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NAD-dependent protein deacylase sirtuin-5, mitochondrial

Related Entries With Identical Sequence