SMTL ID : 6fla.2 (1 other biounit)

3H5 Fab bound to EDIII of DenV 2 Xtal form 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: V.167, H.168, T.169 Chain C: T.168, D.169, D.171 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:T.169, A:T.169, C:T.168, C:T.176 GOL.3: 6 residues within 4Å: Chain A: Y.95 Chain C: Q.42, K.43, P.44, G.45, Q.46 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:G.45, C:Q.46, A:Y.95, A:Y.95

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: Q.35, K.99, A.103, M.104 Chain C: Q.93, N.95, F.100 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Renner, M. et al., Characterization of a potent and highly unusual minimally enhancing antibody directed against dengue virus. Nat. Immunol. (2018)

Release Date

2018-10-24

Peptides

Heavy chain: A
Domain III of Dengue virus 2: B
Light Chain of 3H5: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
L

Heavy chain

Domain III of Dengue virus 2

Light Chain of 3H5

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