SMTL ID : 6fm9.1

Crystal structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

homo-dimer

Ligands

2 x P6L: (2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE(Non-covalent)

P6L.1: 7 residues within 4Å: Chain A: A.204, S.205, W.244, Y.245, R.378, L.382, S.392 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.204, A:S.392 Hydrogen bonds: A:W.244 Salt bridges: A:R.378 P6L.2: 7 residues within 4Å: Chain B: A.204, S.205, W.244, Y.245, R.378, L.382, S.392 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.204, B:S.392 Hydrogen bonds: B:W.244 Salt bridges: B:R.378

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, Y.Y. et al., Structures of DPAGT1 Explain Glycosylation Disease Mechanisms and Advance TB Antibiotic Design. Cell (2018)

Release Date

2018-02-28

Peptides

UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Membrane

We predict this structure to be a membrane protein.
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UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase