SMTL ID : 6fne.1 (1 other biounit)

Structure of human Brag2 (Sec7-PH domains) with the inhibitor Bragsin bound to the PH domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x DY5: (2~{S})-6-methyl-5-nitro-2-(trifluoromethyl)-2,3-dihydrochromen-4-one(Non-covalent)

DY5.1: 5 residues within 4Å: Chain A: L.293, H.294, R.296, K.309, R.323 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.309 Hydrogen bonds: A:R.296, A:R.296, A:R.323

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.2: 8 residues within 4Å: Chain A: K.45, Y.48, R.49, K.87, R.272, V.274, D.376, E.379 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.49, A:K.87, A:Q.241, A:R.272, A:D.376

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nawrotek, A. et al., PH-domain-binding inhibitors of nucleotide exchange factor BRAG2 disrupt Arf GTPase signaling. Nat.Chem.Biol. (2019)

Release Date

2019-03-13

Peptides

IQ motif and SEC7 domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

IQ motif and SEC7 domain-containing protein 1

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