- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- monomer
- Ligands
- 3 x CA: CALCIUM ION(Non-covalent)
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.4: 2 residues within 4Å:- Chain A: P.16, T.387
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:P.16, A:T.387
MPD.5: 9 residues within 4Å:- Chain A: Y.340, K.344, S.493, E.496, I.576, L.579, W.614, E.641
- Ligands: MPD.6
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.340, A:K.344, A:L.579
- Water bridges: A:E.641
MPD.6: 7 residues within 4Å:- Chain A: Y.340, Y.407, D.415, F.418, W.565, W.566
- Ligands: MPD.5
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:Y.340, A:Y.407, A:Y.407, A:W.566
- Water bridges: A:D.415, A:D.415
MPD.7: 5 residues within 4Å:- Chain A: N.308, P.354, E.357, R.433, Y.687
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.687
- Hydrogen bonds: A:E.357
- Water bridges: A:N.308
MPD.8: 4 residues within 4Å:- Chain A: P.15, P.16, T.387, P.404
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.15
MPD.9: 1 residues within 4Å:- Chain A: W.565
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.565, A:W.565, A:W.565, A:W.565
- Water bridges: A:N.414
MPD.10: 7 residues within 4Å:- Chain A: G.33, A.34, Y.393, S.395, G.398, T.462, R.463
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:R.463
MPD.11: 5 residues within 4Å:- Chain A: N.321, L.359, G.360, N.361
- Ligands: CL.17
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.321, A:G.360
MPD.12: 5 residues within 4Å:- Chain A: Y.155, C.162, L.214, T.215, K.218
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.155, A:Y.155, A:L.214
MPD.13: 9 residues within 4Å:- Chain A: T.237, E.238, S.239, T.667, A.668, D.669, T.697, F.698, S.699
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.238
MPD.14: 4 residues within 4Å:- Chain A: K.559, E.563, I.564, W.565
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.565, A:W.565
- Hydrogen bonds: A:K.559, A:K.559, A:E.563
MPD.15: 3 residues within 4Å:- Chain A: Y.216, P.278, Y.279
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:Y.279
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.16: 4 residues within 4Å:- Chain A: Y.155, Q.161, C.162, K.218
Ligand excluded by PLIPCL.17: 3 residues within 4Å:- Chain A: N.321, N.325
- Ligands: MPD.11
Ligand excluded by PLIPCL.18: 2 residues within 4Å:- Chain A: E.253, G.254
Ligand excluded by PLIPCL.19: 6 residues within 4Å:- Chain A: D.378, T.381, K.383, E.386
- Ligands: CA.2, CA.3
Ligand excluded by PLIP- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.22: 5 residues within 4Å:- Chain A: P.36, I.107, S.108, D.109, F.466
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.36, A:I.107
- Hydrogen bonds: A:F.466
ACT.23: 2 residues within 4Å:- Chain A: T.387, A.388
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.387
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.24: 6 residues within 4Å:- Chain A: Y.26, I.44, N.47, Q.48, Y.49, A.102
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:I.44, A:N.47, A:Q.48, A:Y.49, A:A.102
MG.25: 3 residues within 4Å:- Chain A: K.631, N.632, W.634
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:K.631, A:W.634, H2O.14
MG.26: 1 residues within 4Å:- Chain A: K.540
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:K.540, H2O.9, H2O.22, H2O.24
MG.27: 4 residues within 4Å:- Chain A: D.146, F.147, G.188, T.189
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.146, A:F.147, A:G.188, H2O.3, H2O.21
- 2 x NI: NICKEL (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumar, K. et al., Novel insights into the degradation of beta-1,3-glucans by the cellulosome of Clostridium thermocellum revealed by structure and function studies of a family 81 glycoside hydrolase. Int.J.Biol.Macromol. (2018)
- Release Date
- 2019-03-13
- Peptides
- Glycoside hydrolase family 81: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- monomer
- Ligands
- 3 x CA: CALCIUM ION(Non-covalent)
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NI: NICKEL (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumar, K. et al., Novel insights into the degradation of beta-1,3-glucans by the cellulosome of Clostridium thermocellum revealed by structure and function studies of a family 81 glycoside hydrolase. Int.J.Biol.Macromol. (2018)
- Release Date
- 2019-03-13
- Peptides
- Glycoside hydrolase family 81: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A