SMTL ID : 6fow.1 (1 other biounit)

The crystal structure of EncM complexed with dioxygen under 10 bar of oxygen pressure.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 34 residues within 4Å: Chain A: W.37, V.73, R.74, G.75, G.76, G.77, H.78, S.79, M.80, H.83, S.84, L.94, G.113, G.134, V.135, V.136, T.139, G.140, G.142, G.143, L.144, L.146, G.149, F.150, G.196, G.199, V.200, V.201, Y.416, N.418, F.419, L.455, N.456 Ligands: OXY.2 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:W.37, A:W.37, A:H.78, A:V.136 Hydrogen bonds: A:V.73, A:V.73, A:G.75, A:G.76, A:G.77, A:H.78, A:S.79, A:S.84, A:S.84, A:V.135, A:G.140, A:G.140, A:G.143, A:L.144, A:F.150, A:F.150, A:V.201, A:V.201, A:Y.416, A:N.418, A:N.418 Water bridges: A:S.79, A:M.80, A:H.83, A:L.141, A:N.456 FAD.3: 34 residues within 4Å: Chain B: W.37, V.73, R.74, G.75, G.76, G.77, H.78, S.79, M.80, H.83, S.84, L.94, G.113, G.134, V.135, V.136, T.139, G.140, G.142, G.143, L.144, L.146, G.149, F.150, G.196, G.199, V.200, V.201, Y.416, N.418, F.419, L.455, N.456 Ligands: OXY.4 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:W.37, B:W.37, B:H.78, B:V.136 Hydrogen bonds: B:V.73, B:V.73, B:G.75, B:G.76, B:G.77, B:H.78, B:S.79, B:H.83, B:S.84, B:S.84, B:V.135, B:G.140, B:G.140, B:G.143, B:L.144, B:G.149, B:F.150, B:F.150, B:V.201, B:V.201, B:Y.416, B:N.418, B:N.418 Water bridges: B:M.80, B:L.141, B:N.456

2 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.2: 7 residues within 4Å: Chain A: L.117, G.134, V.135, V.136, T.139, L.144 Ligands: FAD.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.135, A:V.136, A:T.139 OXY.4: 7 residues within 4Å: Chain B: L.117, G.134, V.135, V.136, T.139, L.144 Ligands: FAD.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.135, B:V.136, B:T.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saleem-Batcha, R. et al., Enzymatic control of dioxygen binding and functionalization of the flavin cofactor. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-05-02

Peptides

Putative FAD-dependent oxygenase EncM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative FAD-dependent oxygenase EncM

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